Drupal modules for browsing and managing Fedora-based digital repositories.
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<?php
/**
* @file
* Utility functions.
*
* @todo this file should be broken out into other files.
*/
/**
* Convert bytes to human readable format.
*
* XXX: Shouldn't Drupal's format_size() be preferred?
*
* @param int $bytes
* Size in bytes to convert
*
* @return string
* Human readable size.
*/
function islandora_convert_bytes_to_human_readable($bytes, $precision = 2) {
$kilobyte = 1024;
$megabyte = $kilobyte * 1024;
$gigabyte = $megabyte * 1024;
$terabyte = $gigabyte * 1024;
if (($bytes >= 0) && ($bytes < $kilobyte)) {
return $bytes . ' B';
}
elseif (($bytes >= $kilobyte) && ($bytes < $megabyte)) {
return round($bytes / $kilobyte, $precision) . ' KB';
}
elseif (($bytes >= $megabyte) && ($bytes < $gigabyte)) {
return round($bytes / $megabyte, $precision) . ' MB';
}
elseif (($bytes >= $gigabyte) && ($bytes < $terabyte)) {
return round($bytes / $gigabyte, $precision) . ' GB';
}
elseif ($bytes >= $terabyte) {
return round($bytes / $terabyte, $precision) . ' TB';
}
else {
return $bytes . ' B';
}
}
/**
* Creates a label for control group symbols.
*/
function islandora_control_group_to_human_readable($control_group) {
switch ($control_group) {
case 'M':
return '<b>M</b>anaged';
case 'X':
return 'Inline <b>X</b>ML';
case 'R':
return '<b>R</b>edirect';
case 'E':
return '<b>E</b>xternally Referenced';
default:
return $control_group;
}
}
/**
* Checks if the given pid is valid.
*
* @param string $pid
* The object id to check.
*
* @return bool
* TRUE if valid, FALSE otherwise.
*/
function islandora_is_valid_pid($pid) {
return drupal_strlen(trim($pid)) <= 64 && preg_match('/^([A-Za-z0-9]|-|\.)+:(([A-Za-z0-9])|-|\.|~|_|(%[0-9A-F]{2}))+$/', trim($pid));
}
/**
* Checks if the given namespace is valid.
*
* @param string $namespace
* The namespace to check without the ":" character.
*
* @return bool
* TRUE if valid, FALSE otherwise.
*/
function islandora_is_valid_namespace($namespace) {
return drupal_strlen(trim($namespace)) <= 64 && preg_match('/^([A-Za-z0-9]|-|\.)+$/', trim($namespace));
}
/**
* Checks if the given datastream id is valid.
*
* @param string $dsid
* The datastream id to check.
*
* @return bool
* TRUE if valid, FALSE otherwise.
*/
function islandora_is_valid_dsid($dsid) {
return drupal_strlen(trim($dsid)) <= 64 && preg_match('/^[a-zA-Z0-9\_\-\.]+$/', trim($dsid));
}
/**
* Helper function to describe a Fedora repository.
*
* Can be used to check if Fedora is available.
*
* @param string $url
* A url to a Fedora repository, if NULL the default is used.
*
* @return array
* Returns an array describing the repository. Returns FALSE if Fedora is down
* or if the url is incorrect.
*/
function islandora_describe_repository($url = NULL) {
$url = isset($url) ? $url : variable_get('islandora_base_url', 'http://localhost:8080/fedora');
$connection = islandora_get_tuque_connection();
if ($connection) {
try {
$info = $connection->api->a->describeRepository();
return $info;
}
catch (RepositoryException $e) {
return FALSE;
}
}
return FALSE;
}
/**
* Build and invoke a list of hooks by combining the given hook and refinements.
*
* The given hook will be called as MODULE_HOOK, and for each hook refinement
* as MODULE_REFINEMENT_HOOK. Any additional arguments passed to this function
* will be passed as arguments to module_invoke_all().
*
* @see islandora_build_hook_list()
*
* @param string $hook
* A hook to call.
* @param array $refinements
* An array of strings, that will be escaped and concatinated with the given
* hook. This will most likely be PIDs/DSIDs/Labels etc. We often refine our
* hooks using an objects model.
* @param array $args
* Any arguments to pass onto module_invoke_all().
*
* @return array
* The merged results from all the hooks.
*/
function islandora_invoke_hook_list($hook, array $refinements, array $args) {
$return = array();
foreach (islandora_build_hook_list($hook, $refinements) as $hook) {
array_unshift($args, $hook);
$result = call_user_func_array('module_invoke_all', $args);
$return = array_merge_recursive($return, $result);
array_shift($args);
}
return $return;
}
/**
* Build a list of all the hooks to call.
*
* Concatenates each hook $refinement (escaped) to the hook name, for calling
* with module_invoke_all().
*
* Any non-valid PHP function characters in the given refinements are
* converted to "_" characters.
*
* @param string $hook
* The base hook to concatenate.
* @param array $refinements
* An array of strings, that will be escaped and concatinated with the given
* hook. This will most likely be PIDs/DSIDs/Labels etc. We often refine our
* hooks using an objects model.
*
* @return array
* An array with each refinement escaped and concatenated with the base hook
* name, in addition to the base hook name.
*/
function islandora_build_hook_list($hook, $refinements = array()) {
$refinements = array_unique($refinements);
$hooks = array($hook);
foreach ($refinements as $refinement) {
$refinement = preg_replace('/[^a-zA-Z0-9_]/', '_', $refinement);
$hooks[] = "{$refinement}_{$hook}";
}
return $hooks;
}
/**
* Escape a Fedora PID to be valid inside of a PHP function name.
*
* Originally intended to allow inclusion of a PID in a module_invoke_all()
* call.
*/
function islandora_escape_pid_for_function($pid) {
// Apparently, case doesn't matter for function calls in PHP, so let's not
// really worry about changing the case.
return str_replace(
// Any PID characters which are not valid in the name of a PHP function.
array(
':',
'-',
),
'_',
$pid
);
}
/**
* Gets the namespace of the given id.
*
* @param string $id
* Either a PID or namespace to check for accessibility. Any string like those
* below are fine.
*
* @code
* 'islandora',
* 'islandora:',
* 'islandora:1234',
* @endcode
*
* @return string
* The namespace portion of the given string.
*/
function islandora_get_namespace($id) {
$matches = array();
preg_match('/^([^:]*)/', $id, $matches);
return $matches[0];
}
/**
* Checks the given namespace/PID is/has an accessible namespace.
*
* Accessible is defined by the "islandora_pids_allowed" variable.
*
* @param string $id
* Either a PID or namespace to check for accessibility. Any string like those
* below are fine.
*
* @code
* 'islandora',
* 'islandora:',
* 'islandora:1234',
* @endcode
*
* @return bool
* TRUE if accessible, FALSE otherwise.
*/
function islandora_namespace_accessible($id) {
if (variable_get('islandora_namespace_restriction_enforced', FALSE)) {
$namespace = islandora_get_namespace($id) . ':';
$allowed_namespaces = explode(" ", variable_get('islandora_pids_allowed', 'default: demo: changeme: islandora: ilives: islandora-book: books: newspapers: '));
return in_array($namespace, $allowed_namespaces);
}
return TRUE;
}
/**
* Gets any objects that the given object has a parent relationship with.
*
* Parent relationships are defined as (isMemberOf, isMemberOfCollection).
*
* This function gets its info from the RELS-EXT directly rather than through an
* risearch.
*
* @param AbstractObject $object
* The object whose parents will be returned.
*
* @return array
* An array of FedoraObject's that the given object has a
* (isMemberOf, isMemberOfCollection) relationship with.
*/
function islandora_get_parents_from_rels_ext(AbstractObject $object) {
try {
$collections = array_merge(
$object->relationships->get(FEDORA_RELS_EXT_URI, 'isMemberOfCollection'),
$object->relationships->get(FEDORA_RELS_EXT_URI, 'isMemberOf'));
}
catch (RepositoryException $e) {
// @todo some logging would be nice, not sure what this throws.
return array();
}
$map = function($o) {
return islandora_object_load($o['object']['value']);
};
$collections = array_map($map, $collections);
return array_filter($collections);
}
/**
* Gets the datastreams requirments that are missing.
*
* @param AbstractObject $object
* The object which models will be used to determine what datastreams it
* should have.
*
* @return array
* The DS-COMPOSITE-MODEL defined datastreams that are required for the given
* object, but not already present.
*/
function islandora_get_missing_datastreams_requirements(AbstractObject $object) {
module_load_include('inc', 'islandora', 'includes/utilities');
$datastreams = islandora_get_datastreams_requirements($object);
foreach ($datastreams as $dsid => $requirements) {
if (isset($object[$dsid])) {
unset($datastreams[$dsid]);
}
}
return $datastreams;
}
/**
* Gets the required datastreams for the given object.
*
* Checks the object's content model's for which datastream are expected to be
* used with this object, as defined by the DS-COMPOSITE-MODEL datastreams.
*
* For duplicate datastreams in the models, the first model defines the
* datastreams attributes regardless of what other models define.
* This should be undefined behavior according to the documentation.
*
* @link https://wiki.duraspace.org/display/FEDORA34/Fedora+Digital+Object+Model#FedoraDigitalObjectModel-ContentModelObjectCMODEL @endlink
*
* @see islandora_get_required_datastreams_from_content_model()
*
* @param AbstractObject $object
* The object which models will be used to determine what datastreams it
* should have.
*
* @return array
* The DS-COMPOSITE-MODEL defined datastreams that are required for the given
* object.
*/
function islandora_get_datastreams_requirements(AbstractObject $object) {
return islandora_get_datastreams_requirements_from_models($object->models);
}
/**
* Get the list of which datastreams are valid in the given set of models.
*
* @param array $models
* An array of content models PIDs from which to parse the DS-COMPOSITE-MODEL
* stream.
*
* @return array
* An associative array of associative arrays, merged from calls to
* islandora_get_datastreams_requirements_from_content_model().
*/
function islandora_get_datastreams_requirements_from_models(array $models) {
$dsids = array();
foreach ($models as $model_pid) {
$model = islandora_object_load($model_pid);
if (isset($model) && $model) {
$dsids += islandora_get_datastreams_requirements_from_content_model($model);
}
}
// The AUDIT Datastream can not really be added, so it can't really be
// missing.
unset($dsids['AUDIT']);
return $dsids;
}
/**
* Checks the given content model for which datastreams are required.
*
* As defined by it's DS-COMPOSITE-MODEL datastream.
*
* @todo Add support for fetching the schema information.
*
* @param AbstractObject $object
* The content model whose DS-COMPOSITE-MODEL datastream will be used to
* determine what datastreams are required.
*
* @return array
* An associative array mapping datastream IDs to associative arrays
* containing the values parsed from the DS-COMPOSITE-MODEL on the given
* object--of the form:
* - DSID: A datastream ID being described.
* - "id": A string containing ID of the datastream.
* - "mime": A array containing MIME-types the stream may have.
* - "optional": A boolean indicating if the given stream is optional.
*/
function islandora_get_datastreams_requirements_from_content_model(AbstractObject $object) {
if (empty($object[DS_COMP_STREAM])) {
return array();
}
$xml = new SimpleXMLElement($object[DS_COMP_STREAM]->content);
foreach ($xml->dsTypeModel as $ds) {
$dsid = (string) $ds['ID'];
$optional = strtolower((string) $ds['optional']);
$mime = array();
foreach ($ds->form as $form) {
$mime[] = (string) $form['MIME'];
}
$dsids[$dsid] = array(
'id' => $dsid,
'mime' => $mime,
'optional' => ($optional == 'true') ? TRUE : FALSE,
);
}
return $dsids;
}
/**
* Prepare an ingestable object.
*
* @param string $namespace
* The namespace in which the PID for the new object will be created.
* @param string $label
* An optional label to apply to the object.
* @param array $datastreams
* A array of datastreams to add, where each datastream definition is an
* associative array containing:
* - dsid: The datastream ID.
* - label: An optional label for the datastream.
* - mimetype: A MIMEtype for the datastream; defaults to text/xml.
* - control_group: One of X, M, R and E; defaults to M.
* - datastream_file: A web-accessible path, for which we try to get an
* absolute path using url().
* @param array $content_models
* An array of content model PIDs to which the new object should subscribe.
* @param array $relationships
* An array of relationships, where each relationship is an associative array
* containing:
* - relationship: The predicate for the relationship, from the Fedora
* RELS-EXT namespace.
* - pid: The object for the relationship, to which we are creating the
* relationhsip.
*
* @return NewFedoraObject
* An ingestable NewFedoraObject.
*/
function islandora_prepare_new_object($namespace = NULL, $label = NULL, $datastreams = array(), $content_models = array(), $relationships = array()) {
global $user;
$tuque = islandora_get_tuque_connection();
$object = isset($namespace) ? $tuque->repository->constructObject($namespace) : new IslandoraNewFedoraObject(NULL, $tuque->repository);
$object->owner = isset($user->name) ? $user->name : $object->owner;
$object->label = isset($label) ? $label : $object->label;
foreach ($content_models as $content_model) {
$object->relationships->add(FEDORA_MODEL_URI, 'hasModel', $content_model);
}
foreach ($relationships as $relationship) {
$object->relationships->add(FEDORA_RELS_EXT_URI, $relationship['relationship'], $relationship['pid']);
}
foreach ($datastreams as $ds) {
$dsid = $ds['dsid'];
$label = isset($ds['label']) ? $ds['label'] : '';
$mimetype = isset($ds['mimetype']) ? $ds['mimetype'] : 'text/xml';
// Default 'Managed'
$control_group = 'M';
$groups = array('X', 'M', 'R', 'E');
if (isset($ds['control_group']) && in_array($ds['control_group'], $groups)) {
$control_group = $ds['control_group'];
}
$as_file = FALSE;
if (file_valid_uri($ds['datastream_file'])) {
// A local file with as a Drupal file/stream wrapper URI.
$datastream_file = $ds['datastream_file'];
$as_file = TRUE;
}
elseif (is_readable($ds['datastream_file'])) {
// A local file as a filesystem path.
$datastream_file = drupal_realpath($ds['datastream_file']);
$as_file = TRUE;
}
else {
$scheme = parse_url($ds['datastream_file'], PHP_URL_SCHEME);
if (in_array($scheme, stream_get_wrappers())) {
// A URI which gets handled by one of the PHP-native stream wrappers.
$datastream_file = $ds['datastream_file'];
$as_file = TRUE;
}
else {
// Schema does not match available php stream wrapper. Attempt to
// set datastream_file by url for the given scheme. Https (SSL) can
// cause this to fail, and trigger an output log in watchdog.
$datastream_file = url($ds['datastream_file'], array('absolute' => TRUE));
watchdog('islandora',
'Attempting to ingest %file in islandora_prepare_new_object(), but it does not appear to be readable. We will pass the path through url(), and pass along as such.',
array('%file' => $datastream_file),
WATCHDOG_WARNING);
}
}
$datastream = $object->constructDatastream($dsid, $control_group);
$datastream->label = $label;
$datastream->mimetype = $mimetype;
switch ($control_group) {
case 'M':
if ($as_file) {
$datastream->setContentFromFile($datastream_file);
}
else {
$datastream->setContentFromUrl($datastream_file);
}
break;
case 'X':
$datastream->setContentFromString(file_get_contents($datastream_file));
break;
}
$object->ingestDatastream($datastream);
}
return $object;
}
/**
* Displays the repository is inaccessible message.
*
* Use anywhere we want to ensure a consitent error message when the repository
* is not accessible.
*/
function islandora_display_repository_inaccessible_message() {
$text = t('Islandora configuration');
$link = l($text, 'admin/islandora/configure', array('attributes' => array('title' => $text)));
$message = t('Could not connect to the repository. Please check the settings on the !link page.',
array('!link' => $link));
drupal_set_message(check_plain($message), 'error', FALSE);
}
/**
* Create a message stating if the given executable is available.
*
* If the both the version and required version are given then only if the
* version is equal to or greater than the required version the executable
* will be considered correct.
*
* @param string $path
* The absolute path to an executable to check for availability.
* @param string $version
* The version of exectuable.
* @param string $required_version
* The required version of exectuable.
*
* @return string
* A message in html detailing if the given executable is accessible.
*/
function islandora_executable_available_message($path, $version = NULL, $required_version = NULL) {
$available = is_executable($path);
if ($available) {
$image = theme_image(array('path' => 'misc/watchdog-ok.png', 'attributes' => array()));
$message = t('Executable found at @path', array('@path' => $path));
if ($version) {
$message .= t('<br/>Version: @version', array('@version' => $version));
}
if ($required_version) {
$message .= t('<br/>Required Version: @version', array('@version' => $required_version));
if (version_compare($version, $required_version) < 0) {
$image = theme_image(array('path' => 'misc/watchdog-error.png', 'attributes' => array()));
}
}
}
else {
$image = theme_image(array('path' => 'misc/watchdog-error.png', 'attributes' => array()));
$message = t('Unable to locate executable at @path', array('@path' => $path));
}
return $image . $message;
}
/**
* Create a message stating if the given directory exists.
*
* @param string $path
* The absolute path to an executable to check for availability.
*
* @return string
* A message in HTML detailing if the given directory is exists.
*/
function islandora_directory_exists_message($path) {
$available = is_dir($path);
if ($available) {
$image = theme_image(array('path' => 'misc/watchdog-ok.png', 'attributes' => array()));
$message = t('Directory found at @path', array('@path' => $path));
}
else {
$image = theme_image(array('path' => 'misc/watchdog-error.png', 'attributes' => array()));
$message = t('Unable to locate directory at @path', array('@path' => $path));
}
return $image . $message;
}
/**
* Gets the default value for the given system_settings_form() element.
*
* Checks the $form_state for the default value if not it checks
* variable_get(). Assumes #tree is FALSE. This is only really required
* for elements that utilize AJAX, as their value can change before the
* submit actually takes place.
*
* @param string $name
* The name of the system settings form element.
* @param mixed $default_value
* The default value for the system settings form element.
* @param array $form_state
* The Drupal form state.
*
* @return mixed
* The default value for use in a the system_settings_form().
*/
function islandora_system_settings_form_default_value($name, $default_value, array &$form_state) {
return isset($form_state['values'][$name]) ? $form_state['values'][$name] : variable_get($name, $default_value);
}
/**
* Returns basic information about DS-COMPOSITE-MODEL.
*
* @deprecated
* The pre-existing--and more flexible--
* islandora_get_datastreams_requirements_from_content_model() should be
* preferred, as it addresses the case where a stream can be allowed to have
* one of a set of mimetypes (this functions appears to only return the last
* declared mimetype for a given datastream).
*
* @param string $pid
* The PID of content model containing DS_COMP stream.
*
* @return array
* An associative array mapping datastream IDs to an associative array
* representing the parsed DS-COMPOSITE-MODEL of the form:
* - DSID: A string containing the datastream ID.
* - "mimetype": A string containing the last mimetype declared for the
* given datastream ID.
* - "optional": An optional boolean indicating that the given datastream
* is optional.
*/
function islandora_get_comp_ds_mappings($pid) {
$cm_object = islandora_object_load($pid);
if (!isset($cm_object) || !isset($cm_object['DS-COMPOSITE-MODEL'])) {
return FALSE;
}
$datastream = $cm_object['DS-COMPOSITE-MODEL'];
$ds_comp_stream = $datastream->content;
$sxml = new SimpleXMLElement($ds_comp_stream);
$mappings = array();
foreach ($sxml->dsTypeModel as $ds) {
$dsid = (string) $ds['ID'];
$optional = (string) $ds['optional'];
foreach ($ds->form as $form) {
$mime = (string) $form['MIME'];
if ($optional) {
$mappings[$dsid]['optional'] = $optional;
}
$mappings[$dsid]['mimetype'] = $mime;
}
}
return $mappings;
}
/**
* Checks that the given/current account has all the given permissions.
*
* @param array $perms
* The permissions to check.
* @param mixed $account
* (optional) The account to check, if not given use currently logged in user.
*
* @return bool
* TRUE if the account has all the given permissions, FALSE otherwise.
*/
function islandora_user_access_all(array $perms, $account = NULL) {
foreach ($perms as $perm) {
if (!user_access($perm, $account)) {
return FALSE;
}
}
return TRUE;
}
/**
* Checks that the given/current account has at one of the given permissions.
*
* @param array $perms
* The permissions to check.
* @param mixed $account
* (optional) The account to check, if not given use currently logged in user.
*
* @return bool
* TRUE if the account has at least one of the given permissions, FALSE
* otherwise.
*/
function islandora_user_access_any(array $perms, $account = NULL) {
foreach ($perms as $perm) {
if (user_access($perm, $account)) {
return TRUE;
}
}
return FALSE;
}
/**
* Gets the list of allowed namespaces as defined by 'islandora_pids_allowed'.
*
* @return array
* The list of namespaces striped of trailing ":" characters.
*/
function islandora_get_allowed_namespaces() {
$matches = array();
$allowed_namespaces = variable_get('islandora_pids_allowed', 'default: demo: changeme: islandora:');
preg_match_all('/([A-Za-z0-9-\.]+):/', $allowed_namespaces, $matches);
return $matches[1];
}
/**
* Gets a list of all existing content models.
*
* If 'islandora_namespace_restriction_enforced' is set to true only return
* content models in the allowed namespace.
*
* @param bool $ignore_system_namespace
* Ignore content models in the 'fedora-system' namespace.
*
* @return array
* An associative array of all existing content models.
* - pid: The PID of the content model object.
* - pid: The PID of the content model object.
* - label: The label of the content model object.
*/
function islandora_get_content_models($ignore_system_namespace = TRUE) {
module_load_include('inc', 'islandora', 'includes/utilities');
$tuque = islandora_get_tuque_connection();
$query = "PREFIX fm: <" . FEDORA_MODEL_URI . ">
PREFIX fr: <" . FEDORA_RELS_EXT_URI . ">
SELECT ?object ?label
FROM <#ri>
WHERE {
{?object fm:hasModel <info:fedora/fedora-system:ContentModel-3.0>;
fm:state fm:Active
}
UNION{
?object fr:isMemberOfCollection <info:fedora/islandora:ContentModelsCollection>;
fm:state fm:Active
}
OPTIONAL{
?object fm:label ?label
}
}";
$content_models = array();
$results = $tuque->repository->ri->sparqlQuery($query, 'unlimited');
foreach ($results as $result) {
$content_model = $result['object']['value'];
$label = $result['label']['value'];
$namespace = islandora_get_namespace($content_model);
$ignore = $ignore_system_namespace && $namespace == 'fedora-system';
$ignore |= !islandora_namespace_accessible($namespace);
if (!$ignore) {
$content_models[$content_model] = array('pid' => $content_model, 'label' => $label);
}
}
return $content_models;
}
/**
* Returns Drupal tableselect element allowing selection of Content Models.
*
* @param string $drupal_variable
* the name of the Drupal variable holding selected content models
* Content models held in this variable will appear at the top of
* the displayed list
* @param array $default_values_array
* default values to display if $drupal_variable is unset
*
* @return array
* Drupal form element allowing content model selection
*/
function islandora_content_model_select_table_form_element($drupal_variable, $default_values_array = array('')) {
$defaults = array();
$rows = array();
$content_models = array();
$options = islandora_get_content_models(TRUE);
foreach ($options as $option) {
$content_models[$option['pid']] = $option['label'];
}
$selected = array_values(variable_get($drupal_variable, $default_values_array));
$comparator = function ($a, $b) use ($selected) {
$a_val = $b_val = 0;
if (in_array($a, $selected)) {
$a_val = 1;
}
if (in_array($b, $selected)) {
$b_val = 1;
}
return $b_val - $a_val;
};
uksort($content_models, $comparator);
foreach ($content_models as $pid => $label) {
$rows[$pid] = array(
'pid' => $pid,
'title' => $label,
);
$defaults[$pid] = in_array($pid, $selected);
}
$header = array(
'pid' => array('data' => t('PID')),
'title' => array('data' => t('Content Model')),
);
// Build and return table element.
$element = array(
'#type' => 'tableselect',
'#header' => $header,
'#options' => $rows,
'#default_value' => $defaults,
'#empty' => t("There are no content models in this Fedora Repository."),
);
return $element;
}